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Update 2.1 Batch job submission
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Jan 24, 2022
by
Odunlami Marc
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@@ -20,14 +20,14 @@ Slurm job scripts contains two parts:
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@@ -20,14 +20,14 @@ Slurm job scripts contains two parts:
1.
Unix directives: commands for your job execution, such as loading modules, launching an executable program, etc.
1.
Unix directives: commands for your job execution, such as loading modules, launching an executable program, etc.
Here are some self-explanatory job script examples for several softwares/applications on Pyrene:
Here are some self-explanatory job script examples for several softwares/applications on Pyrene:
*
[
Sequential job
](
uploads/85fd298c792d1880ea2562948eede0c1
/sseq.sh
)
.
*
[
Sequential job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/sseq.sh
)
.
*
[
Parallel, shared memory (OpenMP type) job
](
uploads/08a227aa299e60ce92f143fcc8eef1cd
/spar_shared.sh
)
.
*
[
Parallel, shared memory (OpenMP type) job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/spar_shared.sh
)
.
*
[
Parallel, distributed memory (MPI with OpenMPI) job
](
uploads/4fd46a75558729b745826225fa1d41d1
/spar_distrib_openmpi.sh
)
.
*
[
Parallel, distributed memory (MPI with OpenMPI) job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/spar_distrib_openmpi.sh
)
.
*
[
Parallel, distributed memory (MPI with Intel MPI) job
](
uploads/4095969fad8ab9fdf030e4253fe385ac
/spar_distrib_intelmpi.sh
)
.
*
[
Parallel, distributed memory (MPI with Intel MPI) job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/spar_distrib_intelmpi.sh
)
.
*
[
Gaussian 09
](
uploads/345b6f1bd5600b4bff6f3f8cd70abcf5/sg09.sh
)
/
[
Gaussian 16
](
uploads/aad98c99f8f73d8a94c0c25932d45d2d
/sg16.sh
)
job.
*
[
Gaussian 09
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs/sg09.sh
)
/
[
Gaussian 16
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/sg16.sh
)
job.
*
[
Molpro job
](
uploads/9f57fbbd7c8e14591f98dfdc63c5b58c
/smolpro.sh
)
.
*
[
Molpro job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/smolpro.sh
)
.
*
[
R job
](
uploads/c700fd70b0e85877e0d61590ee691a2b
/sR.sh
)
.
*
[
R job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/sR.sh
)
.
*
[
ORCA job
](
uploads/aff01cfb08d2cc9da4310ad253a5c0c2
/sorca.sh
)
*
[
ORCA job
](
https://git.univ-pau.fr/num-as/pyrene-cluster/-/blob/master/jobs
/sorca.sh
)
## Usage of the scratch space in jobs
## Usage of the scratch space in jobs
The
`/scratch`
space is accessible in jobs using the
`SCRATCHDIR`
environment variable.
The
`/scratch`
space is accessible in jobs using the
`SCRATCHDIR`
environment variable.
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